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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 16
----------------gtgtggcctttgtttctcatctgt-tatgggcattttactctgaaaattcttt---ctttgaagtgttacgatgttgtg-aatcactgttc-----------agGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
                   |    |  |  | | | || |  || | ||| || ||| |    ||||||   ||||  | ||||  | || |  | | |  |||||            |||| |||||||| ||  |||| |||| ||| |||||||||||||| ||  | |||||||| |||||||| |||||||| || |||||| |||| || ||||
gttagcagttttttcccaataagttcggccttttacctttgcattgccatgttgctcagtggcttcttttacctttatactgttgtgttgctcagtagtttctgtttgaattgattgtagGTTTTGGAGATCAACTTGGTCACTTACCCAAATGTTGCTGATGCCATCCTTGCTAATGGTATGTTCAGTCATTATGATCGCCCTCGTGTTGCTCAGCTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 16
-----------------------------gtgtggcctttgt-ttctcatct--gttatgggca--ttttactctgaaaattctttctttgaagtgttacgatgttg-----tgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
                              | | |||||||  ||  ||| |   | |  |||   ||||||  | | | |  | | ||||   || |  |  |||      |||||   | |  |||| |||||||| ||  |||| |||| ||| |||||||||||||| ||  | |||||||| |||||||| |||||||| || |||||| |||| || ||||
gttagcagttttttcccaataagttaggccttttgcctttgcattgccatgttgctcagtggcttcttttacctttatactgttgtgtttgtgttgctcagtagtttctgtttgaattggt-tgtagGTTTTGGAGATCAACTTGGTCACTTACCCAAATGTTGCTGATGCCATCCTTGCTAATGGTATGTTCAGTCATTATGATCGCCCTCGTGTTGCTCAGCTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 14
gtgtggcctttgtttctcatct-gttatgggcattttactctgaaaattctttctttgaagtgttacgatgtt------gtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
||  |   ||  ||  |||| |   ||||  |||||  ||  ||      |     | || |  | | ||||        || ||     |  |||| |||||||| ||  | ||||||| ||| |||||||| ||||| ||  | || ||||| |||||||| ||||||||||||||||||||||| || || |
gttagtatttgattgttcatttcaatatgaacatttgccttagacctgcatgctgcttaactact-caatgtcttctgcttggattgtcttgtagGTTTTGGAGATCAACTTAGTGACTTACCCAAATGTTGCAGATGCCATTCTTGCGAATGGTATGTTCAGTCATTATGACCGTCCTCGTATTGCTCAGCTCT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT-----------------------------------
                                                                                        | |   || || |   || |  | ||||| |||||||||||||| ||  | |||||||| |||||||| |||||||| || ||||||||||| || || |                                   
-------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgatt-cgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 16
-----gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
          |        | | | ||  | || || ||     || |   | ||||||| ||  | |||      | | ||        ||||| |||||||| ||| |||| || || || ||||| ||||||||||| || || ||||| |||||||||||||||||||| |||||| |||| || ||||
gttgaaaagagttgccacctttta-cttctctgtgctttccctactcaccttcctttcttagaccttttagtgcactctcaaca------cagGTTTTGGAGATCAATTTGGTAACCTTTCCTAATGTGGCTGATGCAATCTTAGCAAATGGGATGTTCAGCCATTATGACCGGCCTCGTGTTGCTCAGCTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 16
-----gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
        | |        |   ||||  |  |    |||  ||    |  |||||||     | ||||   ||  |     |  |    |||||  ||||||||||| |||| ||||| || ||||| ||||||||  |||| || ||||| ||||||| ||| |||||||| ||||| ||||| |||||||
gttgaaaatagttgccaccttgtatct-ctccgtttttttctctactcaccttctttccccagactgtttaaatcat----ttttcaacacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 16
gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
  ||  | ||| || |||   ||  ||     ||| ||| |  |   | ||| ||| | ||   |  |  ||     |   | | |||||  |||| || |||||||| |||| ||| |||||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||| || |||||||| ||||
--gttactttt-ttcctctgatgcaattttattttcactattcatcatttttttttca-gttccataacatttc---ttgttttacagGTCCTGGAAATCAATCTGGTAACTTACCCAAATGTTGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 3'ss of exon 17
-------------------------------------------------------------------------------gtgtggcctttgtttctcatc-tg---ttatgggcattttactctgaaaattctttc----tttgaagtg--------ttacgatgttgtga-----atcac-tgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
                                                                                | |  || ||  | ||  |  ||    || |||  ||||  | |  |   |||||     || ||| ||        ||  ||| ||  ||      |||| |  ||||||  ||||||| ||| |||| || || |||||||| |||||||||||  |||| ||||||||||||  ||||||||| |||||||| ||||| ||||| |
gtgtgtgttggcttgctgcaagctacgactttgtagtactatcaggacattggaatcagttcagtatttgtcatgctagttatctccattactcctactaatgaatctaggggagtttttatgtacattatcttttaaaattcgaaatgacctaagtttctgatatttagattgatgtcacattctcagGTACTGGAGATCAATTTGGTCACATTTCCCAATGTGGCTGATGCAATTCTGGCGAATGGCATGTTCTCCCATTATGATCGTCCTCGCATTGCTCAACTCT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
lower sequence: PP1S270_53V6.1 (Physcomitrella patens), 3'ss of exon 16
------gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
       | |     | | ||||||   ||||       |    | | |  |||| ||     || |  | |  |  | |  |    | | ||||   | || || ||||| || ||||| || || || || ||||| || ||| |||||||||| ||||  ||||||||||||||||| ||||| || ||||
gtaaaaatttaaatctagcttctca---gttacatttgctgattttttatgattcctt-----aactcatgctgtactttccacgtgtatacagGCTCTCGAAATCAATCTTGTCACTTTTCCAAACGTCGCAGATGCGATTTTGACTAATGGCATCTTCAAACATTATGACCGTCCTCGAATTGCTCAGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT
         aaaattctttcttt  TA-rich tract