1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttacgtgatttgctttatacctgtcagcctttttcacctttttttcttctttcaattttataccttgaaaacaaataactaatacttttgatgcctgtagGCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAATTGCAAAGGAG
species | Glycine max |
transcript | GLYMA14G03960.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA GCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAATEST: gi|193510804|gb|FK466714.1|FK466714
genomic: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGAgtgagatact ... atgcctgtagGCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAAT
EST: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA GCTTGCTATTCAGAGACTGGAGATTGCAAAA-GTGATTTGCAAEST: gi|193500503|gb|FK464048.1|FK464048
genomic: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGAgtgagatact ... atgcctgtagGCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAA
EST: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA GCTTGCTATTCAGAGEST: gi|9820861|gb|BE556371.1|BE556371
genomic: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGAgtgagatact ... atgcctgtagGCTTGCTATTCAGAG
EST: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA GCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAAT
genomic: CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGAgtgagatact ... atgcctgtagGCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAAT
cttctttcaattttataccttgaaaacaaataactaatacttttgatgcctgtagGCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAATTGCAAAGGAG
aaaacaaataactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacgtgatttgctttatacctgtcagcctttttcacctttttttcttctttcaattttataccttgaaaacaaataactaatacttttgatgcctgtagGCTTGCTATTCAGAGACTGGAGATTGCAAAAAGTGATTTGCAACTCAGAATTGCAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - -tgatttg
- - - - - - - - - -cctgtca
- - - - - - - - - - - - - gcctttt
- - - - - - - - - - - - - - - - -tcacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa