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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcagtcatgattctctttcatcgcaatgaattcctatattatggatttttgttccttggctgattttgttaccaattgcagTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGG

Basic information

species Glycine max
transcript GLYMA13G40430.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 16
gtttgctcagtcatgatt-ctctttcatcgcaatgaa-ttcctatat-tatggatttttgttccttggctgat-tttgttacca--attgcagTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGG
    |  ||| |||  || | || ||||   | | || || | || | | |  ||| || |   || | |||  | |  |||     |||||| ||||| ||||| ||| | || |||||||||||||| |||||||| || ||||| |||||
----gtacagccatagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23728239|gb|BU762167.1|BU762167
EST:     CTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAG                         TTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCT
genomic: CTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGgtttgctcag ... ccaattgcagTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattcctatattatggatttttgttccttggctgattttgttaccaattgcagTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGG
                               ggctgat  putative branch site (score: 4)
        tatattatggattttt  TA-rich tract