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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtcagctatgattgtctcattgcattgggtccttattatatcaaaaaaatttatcctttgttgatatttttttacctctttgcagCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACTTGCTTGGGG

Basic information

species Glycine max
transcript GLYMA12G07740.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315254|gb|GR830247.1|GR830247
EST:     TAGG-TCAGTTTCCAAATACAGCCTCATATCTACGACTTTGGGCATTAAG                         CTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACT
genomic: TAGGTTCAGTTT-CAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... ctctttgcagCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACT
EST: gi|254325135|gb|GR834560.1|GR834560
EST:     CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAG                         CTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACT
genomic: CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... ctctttgcagCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACT
EST: gi|254325136|gb|GR834561.1|GR834561
EST:     CTAGGTTCAGTTTCAAATACAG-CTCATATCTACGACTTTGGGCATTAAG                         CTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACT
genomic: CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... ctctttgcagCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACT
EST: gi|193312420|gb|FK274356.1|FK274356
EST:     CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAG                         CTTGGCTCACTCA
genomic: CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... ctctttgcagCTTGGCTCACTCA
EST: gi|208102379|gb|GD897820.1|GD897820
EST:     CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAG                         CTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCT
genomic: CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... ctctttgcagCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttattatatcaaaaaaatttatcctttgttgatatttttttacctctttgcagCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACTTGCTTGGGG
                            tgttgat  putative branch site (score: 4)
                                  tatttttttacctctt  CT-rich tract
     ttatatcaaaaaaatt  TA-rich tract