1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtacttgtcccctttatccttgggaagcattgtggtttttctttgtcctagtcctagacccctggtatatatcacgaagtgtatatttcaagcgtggagcttattttatttttctctggcacggaatttgtggaaaataaaacaataatatttttgtggaaatctaatcactgcttcatgtattggatattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACCAACTGGAGGATTTGGAGGTTGTCACAGCAGACTACATATTGAAAGTGG
species | Glycine max |
transcript | GLYMA12G04820.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAG GTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACEST: gi|18041035|gb|BM309329.1|BM309329
genomic: TGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAGgtacttgtcc ... tattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATAC
EST: TGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAG GTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACEST: gi|193626963|gb|FK577527.1|FK577527
genomic: TGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAGgtacttgtcc ... tattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATAC
EST: TGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAG GTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACEST: gi|13311361|gb|BG405012.1|BG405012
genomic: TGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAGgtacttgtcc ... tattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATAC
EST: GCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAG GTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATAC
genomic: GCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAGgtacttgtcc ... tattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATAC
caataatatttttgtggaaatctaatcactgcttcatgtattggatattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACCAACTGGAGGATTTGGAGGTTGTCACAGCAGACTACATATTGAAAGTGG
atctaat putative branch site (score: 3)
atatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtcccctttatccttgggaagcattgtggtttttctttgtcctagtcctagacccctggtatatatcacgaagtgtatatttcaagcgtggagcttattttatttttctctggcacggaatttgtggaaaataaaacaataatatttttgtggaaatctaatcactgcttcatgtattggatattgaccagGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACCAACTGGAGGATTTGGAGGTTGTCACAGCAGACTACATATTGAAAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG