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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaacactgcaaagcattgttggttatatgatcatgcatgtcaaagtgtcttttgatctttgatttccattttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGAGTTCTGGAACTACCCAACCCGGCCCTGTATGTTA

Basic information

species Glycine max
transcript GLYMA12G03640.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 16
gtagaacactgcaaagcattgttg-gttatatgatcatgcatgtcaaagtgtcttttgatctttgatttccattttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGAGTTCTGGAACTACCCAACCCGGCCCTGTATGTTA
|||    | |     | |||||   | | |      |  ||||     ||     || | | | |  |||| ||   || |||||||| ||||||||||| || || ||||| ||||| || || ||||| || |||||||| ||||||                                  
gtatggtatttttgtgaattgtgaagatgtccaggaactcatggatttgttgtcattaaccatcgccttccttt---aaccagGAAATCATGTACAAGAAACTTCTGTATGCGATCAGCGAGGGACAGGGGTCTTTTGATTTGTCATGA----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8286288|gb|BE023847.1|BE023847
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|9259017|gb|BE347164.1|BE347164
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTNCTTCTTATTCTACCCAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGAATC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGA-TC
EST: gi|193345012|gb|FK311638.1|FK311638
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|193626370|gb|FK577046.1|FK577046
EST:     TGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: TGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|21602284|gb|BQ612615.1|BQ612615
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|192314633|gb|FK008141.1|FK008141
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|193406557|gb|FK375516.1|FK375516
EST:     AAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGGATC
genomic: AAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCA-GGGATC
EST: gi|193691482|gb|FK630201.1|FK630201
EST:     GTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|51335365|gb|CO979231.1|CO979231
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|12688675|gb|BG155011.1|BG155011
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|254331304|gb|GR845883.1|GR845883
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
EST: gi|192314634|gb|FK008142.1|FK008142
EST:     GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAG                         GAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC
genomic: GTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGgtagaacact ... tttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatcatgcatgtcaaagtgtcttttgatctttgatttccattttaaaacagGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGAGTTCTGGAACTACCCAACCCGGCCCTGTATGTTA
                                      tttccatttt  CT-rich tract
                                     atttccattttaaaa  TA-rich tract