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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtcagctatgattgtctcattaattacattgggtccttattttatcaattttttttatccttggttgatatttttttaccactatgcagCTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGG

Basic information

species Glycine max
transcript GLYMA11G15730.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286470|gb|BI470361.1|BI470361
EST:     CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAG                         CTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACT
genomic: CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... cactatgcagCTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACT
EST: gi|208024482|gb|GD826492.1|GD826492
EST:     CTTTGGGCATTAAG                         CTTAGCTCACTCAGAACTTTCTACCG-TTTTTATGAGAAAGTCCTGCTACT
genomic: CTTTGGGCATTAAGgtttggtcag ... cactatgcagCTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttattttatcaattttttttatccttggttgatatttttttaccactatgcagCTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGG
                            ggttgat  putative branch site (score: 5)
                                    tttttttacc  CT-rich tract
     ttttatcaattttttt  TA-rich tract