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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcaattccatttccatgtaaaactcaatcagttttataatgatactctacaatttgattgttcttaaactgtgtgccttctatcattgttattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAG

Basic information

species Glycine max
transcript GLYMA11G15470.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15470.3 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g03970.t01 (Vitis vinifera), 3'ss of exon 16
agcaattccatttccatgtaaaactcaatcagtt--ttataatgatactctacaat-ttgattgttcttaaactgtgtgccttctatcattgttattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAG
     ||   |     |  |||| | | |||| |  |   ||  | || ||   || ||| |  |   ||   ||  |   || ||||||||  ||||  ||||| |||||||||||||| |||||||| | ||||||||| || ||||| ||||||||||| ||| | |||||| | |||
--ttttttagtaatgctcgaaaaatgattcagatggtggaaaatacacccttttatcttgctcatgtataccttgaataatttttatcattgccattat-cagGATTTGACATCTCAAGTGTCTGCTGAAAGTGACCCTGTTTCCCTTCTACCAAAAGTTGTTTCTCTGCTTTATGTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348098|gb|GR851777.1|GR851777
EST:     AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG                         GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
genomic: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
EST: gi|11687562|gb|BF595238.1|BF595238
EST:     AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG                         GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
genomic: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
EST: gi|207688666|gb|GD673369.1|GD673369
EST:     AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGTAAG                         GAGTTGACAGCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTTCCA
genomic: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
EST: gi|207843904|gb|GD816035.1|GD816035
EST:     AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG                         GAGTTGACATCTCAAGTTTCTG
genomic: AAA-GCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTG
EST: gi|31474848|gb|CD416876.1|CD416876
EST:     AGAACACTTTTACATTCATATCGCAAG                         GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCC
genomic: AGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctacaatttgattgttcttaaactgtgtgccttctatcattgttattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAG
       atttgat  putative branch site (score: 5)
                                    tatcattgttattaaa  TA-rich tract