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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttttattttctgtgccattatctctgtccctgaaccagatagtgatatatttagattttttttttataattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 16
----------------------gttcttttattttctgtgccattatctctgtccctgaaccagatagtgatatatttagatttttttttta-taattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT
                      ||||     ||| |  |  ||||  |  |||  || |    | |  |  ||  |||| | | || | ||  | | ||   | |   ||  ||| || |||||| |||| || ||  | || || |  ||||||||||||||||| ||  | || ||||| |||||||||||||||||| |||| ||| |||  || || |
gttagcagttttttcccaataagttcggccttttacctttgcattgcca-tgttgctcagt-ggcttcttttacctttatactgttgtgttgctcagtagtttctgtttgaattgattgtagGTTTTGGAGATCAACTTGGTCACTTACCCAAATGTTGCTGATGCCATCCTTGCTAATGGTATGTTCAGTCATTATGATCGCCCTCGTGTTGCTCAGCTTT

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 16
--------------------------gttcttttattttctgtgccattatctctgtccctgaac-cagatagtgatatatt-tagattttttttttataattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT
                          |  |||||   || ||       || |   ||  ||    |   ||    |||| | | |  ||| | ||  | | ||   | |   ||  ||| || |||||| |||| || ||  | || || |  ||||||||||||||||| ||  | || ||||| |||||||||||||||||| |||| ||| |||  || || |
gttagcagttttttcccaataagttaggccttttgcctt-tgcattgccatgttgctcagtggcttcttttacctttatactgttgtgtttgtgttgctcagtagtttctgtttgaattggttgtagGTTTTGGAGATCAACTTGGTCACTTACCCAAATGTTGCTGATGCCATCCTTGCTAATGGTATGTTCAGTCATTATGATCGCCCTCGTGTTGCTCAGCTTT

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
gttcttttattttctgtgccattatctctgtccctgaaccagatagtgatatatttagattttttttttataattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT-----------------------------------
                                                                                                   |     ||||| |  ||||   | || || |||||||||||||| ||  | || ||||| |||||||||||||||||| |||| |||||||  || || |                                   
------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcag-cttgattcgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 16
gttcttttattttctgtgccattatctctgtccctgaaccagatagtgatatatttagattttttttttataattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT
               ||     ||| | | |  |  ||    ||  | ||||| ||   ||  || |   |  | | ||||    || | | ||   ||||| ||||||| ||||| || || ||||||||||| || ||||||||||| || ||||| ||||| ||||| |||||| |||||||||||| ||| || |
---------------gtcgatctatttttttttcctaaatgaatttttatatagtttctttagttctgcttcctaataattc---tgctctattc--agGTTTTGGAAATCAATCTGGTTACATTTCCAAATGTCGCAGATGCTATATTAGCTAATGGTATGTTTAGTCACTATGATCGCCCACGTATTGCACAGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgatatatttagattttttttttataattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT
                                           ttttgttttt  CT-rich tract
     tatatttagatttttt  TA-rich tract