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...atgatgatgtcaaaaggtttagtccagtgcaaaaatagaaacaaacttttgaataagcttcactttatgagctgaaaatgttctgcattctctatttcagATATGGGTTTATGGAAACAGTTTCGAGGCCTTCCTTGTTGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCACAAGAAAATGGCATATCCA
species | Glycine max |
transcript | GLYMA11G02030.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|208053671|gb|GD852688.1|GD852688
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTCGAGGCCTTCCTTGTTGCTGTTGTTAAC
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTCGAGGCCTTCCTTGTTGCTGTTGTTAAC
cttttgaataagcttcactttatgagctgaaaatgttctgcattctctatttcagATATGGGTTTATGGAAACAGTTTCGAGGCCTTCCTTGTTGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCACAAGAAAATGGCATATCCA
ttctctatttc CT-rich tract
aaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgatgtcaaaaggtttagtccagtgcaaaaatagaaacaaacttttgaataagcttcactttatgagctgaaaatgttctgcattctctatttcagATATGGGTTTATGGAAACAGTTTCGAGGCCTTCCTTGTTGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCACAAGAAAATGGCATATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - tgatgtc
- - - - - - - - - - - -ccagtgc
- - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc