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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgatagaaccaatagtgcacactggtcttgcattaacaaatacagatatatcagggtggaggtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAG

Basic information

species Glycine max
transcript GLYMA10G41920.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193469471|gb|FK436335.1|FK436335
EST:     ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|19346023|gb|BM890903.1|BM890903
EST:     CTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: CTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|16995857|gb|BM085229.1|BM085229
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|298164021|gb|HO013666.1|HO013666
EST:     CCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: CCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|254327577|gb|GR837186.1|GR837186
EST:     ACTCCCACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|193352354|gb|FK314328.1|FK314328
EST:     ACTCCAACTGCAATCTATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|193436949|gb|FK402578.1|FK402578
EST:     ACTCCAACTGCAATCTATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatatcagggtggaggtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCTTCTCGTGCAATGGTTGTCCTACATCCACTCAAG
                                   ttttcttcctcttgct  CT-rich tract
                     attattatttacaatt  TA-rich tract