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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccagtgtaaatgttctgtttgcatgcatccatacattaatgtcatgaattcatggacatgtcagagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAATTGGCTCTGATCCAAGTCTGCTCAAGGCTCCTGTGAACTATGAAGGG

Basic information

species Glycine max
transcript GLYMA10G35490.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35490.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 15
gtaagccagtgtaaatgttctgtttgcatgcatccatacattaatgtcatgaattcatggacatgtcagagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAATTGGCTCTGATCCAAGTCTGCTCAAGGCTCCTGTGAACTATGAAGGG
||| |||| |     | || |||| | |   ||  ||  |||    |  | | ||||   | |  | ||||||| ||||||||| || ||||||||||| || ||||||||||  ||||||||||  | ||  || ||||| |  || |  || || || || ||||||||||| 
gtatgccatttgctgtattttgtt-gtactaatatat-tattttcattgttatttcactcataatttagagcttccagATCTTTCCGAGAATATGGAGAGGCAGTGCTGAAACTCTTGGAGAATTTGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12687900|gb|BG154296.1|BG154296
EST:     GCAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAAT
genomic: GCAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAAT
EST: gi|58023217|gb|CX709958.1|CX709958
EST:     GCAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAAT
genomic: GCAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAAT
EST: gi|57575221|gb|CX548196.1|CX548196
EST:     GCAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAAT
genomic: GCAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgcatccatacattaatgtcatgaattcatggacatgtcagagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAATTCAATTGGCTCTGATCCAAGTCTGCTCAAGGCTCCTGTGAACTATGAAGGG
               cattaat  putative branch site (score: 3)
                                                ctttc  putative PPT
            atacattaat  TA-rich tract