1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtataatgcagtaggtgtttagttgcaaatgcaaatggattatgtgttcgttatttaataattaactcttgttgtgcatgtgatccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA
species | Glycine max |
transcript | GLYMA10G35210.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTEST: gi|192334521|gb|FK024480.1|FK024480
genomic: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTT
EST: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTEST: gi|120493752|gb|EH221919.1|EH221919
genomic: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTT
EST: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTEST: gi|207736250|gb|GD713529.1|GD713529
genomic: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTT
EST: AATTTAGAGAAAGCNGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTEST: gi|193384975|gb|FK351485.1|FK351485
genomic: AATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTT
EST: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTEST: gi|193646811|gb|FK591366.1|FK591366
genomic: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTT
EST: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGEST: gi|208328364|gb|GE132112.1|GE132112
genomic: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAG
EST: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG GAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAG
genomic: ACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgtataatgca ... atccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAG
gattatgtgttcgttatttaataattaactcttgttgtgcatgtgatccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA
aattaac putative branch site (score: 2)
tcctttt putative PPT
ttatttaataattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatgcagtaggtgtttagttgcaaatgcaaatggattatgtgttcgttatttaataattaactcttgttgtgcatgtgatccttttagGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA