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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggttttctgtgtaatctaacaaattactattcttgcttgttgatataattttcttcctattttttagtggaattttactgaacaccttggggttccttcctatttattatgcttctctggtgactttgttgtatttttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35190.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 17
gtttggttttctgtgtaatctaacaaattactattcttgcttgttgatataattttcttcctattttttagtggaattttactgaacaccttggggttccttcctatttattatgcttctctggtgactttgttgtatttttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG
                                   ||   || | |||  |||| | ||   || | || | ||   |||| |||| |  |   |       | ||   |||    |||| ||      || |  | | | |  | ||||| || ||||| | |||||| |||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||||||||
----------------------------------gctgagttatagatg-aattgttttttaatgtatt-gaggctctttaatgaaaatgtaaag-------cttacccattggcgttctttg------ttctcctctctgtcatgcagGAGAATCTAATTCGTGATGATAACAAACTTATTTTGCTGGCTTCTCTTAGTGATTCATTGGAGTATGTTGCAGACTCAATTGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340254|gb|GR858379.1|GR858379
EST:     CTGAATTAGAACTTAGTGAATTACTGCTAAGTTTGCGTCCTATTAAGCAG                         GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT
genomic: CTGAATTAGAACTTAGTGAATTACTGCTAAGTTTGCGTCCTATTAAGCAGgtttggtttt ... tttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     CTGAATTAGAACTTAGTGAATTACTGCTAAGTTTGCGTCCTATTAAGCAG                         GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT
genomic: CTGAATTAGAACTTAGTGAATTACTGCTAAGTTTGCGTCCTATTAAGCAGgtttggtttt ... tttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttccttcctatttattatgcttctctggtgactttgttgtatttttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG
                                           tttttgcttc  CT-rich tract
      ttcctatttattat  TA-rich tract