1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ctggaagcagtcaaagtacccaagagcaaattactattctggtttggaaagtccatgctttgacaatttatttatttattttttgtttctttttggatagGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAGTTGGCTTTGTGTCTTGACAAAGGTTAGA
species | Glycine max |
transcript | GLYMA10G28200.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAG GAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTEST: gi|192308345|gb|FK000897.1|FK000897
genomic: AATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAGgtatgtgacc ... ttttggatagGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGT
EST: AATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAG GAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAG-CTGGTEST: gi|193394699|gb|FK358200.1|FK358200
genomic: AATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAGgtatgtgacc ... ttttggatagGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGT
EST: AATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAG GAAACTACCTAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTG
genomic: AATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAGgtatgtgacc ... ttttggatagGAAAC-ACC-AGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTG
ggaaagtccatgctttgacaatttatttatttattttttgtttctttttggatagGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAGTTGGCTTTGTGTCTTGACAAAGGTTAGA
ctttgac putative branch site (score: 4)
tttatttatttatttt putative PPT
tttgacaatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggaagcagtcaaagtacccaagagcaaattactattctggtttggaaagtccatgctttgacaatttatttatttattttttgtttctttttggatagGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAGTTGGCTTTGTGTCTTGACAAAGGTTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA