Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgtgactgcaccttcattatataaaatttccccttaattttaggaaatagtaaccacaggaggttctgaatgtcttctaaatctatttttatattttactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATCCTTATACTTGACACACATGCAGAAGTGTTTATTTGGATTGGTCATTCTG

Basic information

species Glycine max
transcript GLYMA10G21350.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410500|gb|FK379833.1|FK379833
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|207759116|gb|GD733559.1|GD733559
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|9565739|gb|BE475248.1|BE475248
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|207697250|gb|GD679471.1|GD679471
EST:     ATCATTTAACAAAGGAAAGTCCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|208143944|gb|GD941561.1|GD941561
EST:     ATCATTTAAC-AAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|207697068|gb|GD679947.1|GD679947
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|13481166|gb|BG510509.1|BG510509
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCATGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|193616108|gb|FK571926.1|FK571926
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
EST: gi|26048794|gb|CA785247.1|CA785247
EST:     ATCATTTAACAAAGGAAAGTTCAAT                         GTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC
genomic: ATCATTTAACAAAGGAAAGTTCAATgtgagttttg ... tactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccacaggaggttctgaatgtcttctaaatctatttttatattttactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATCCTTATACTTGACACACATGCAGAAGTGTTTATTTGGATTGGTCATTCTG
                                          ttttactct  CT-rich tract
                 aatgtcttctaaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttgtgactgcaccttcattatataaaatttccccttaattttaggaaatagtaaccacaggaggttctgaatgtcttctaaatctatttttatattttactctgcagGTAGAGGAGGTTTACAACTTCTCTCAGGACGACCTGTTGCCGGAGGATATCCTTATACTTGACACACATGCAGAAGTGTTTATTTGGATTGGTCATTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT