1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...caatgaacatgtgaaatagaaagagcaaatgattgggtcaacaaaatggattaataaattgaaaagctgaatatcattagtgctgtcatctttctgacagGTATGACCTGGTTGACTTGACACGGCAAGTATTATCAAAATTGGCAAACCAGGTATACCACAAGGCAGTTACTTCTTATCAGAAGAAGAATATTGAAGCT
species | Glycine max |
transcript | GLYMA10G11720.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAACTATTCCTAGCTGGTGGGAAGAATCTTGCTGGAAGTCTCACATATAG GTATGACCTGGTTGACTTGACACGGCAAGTATTATCAAAATTGGCAAACCA
genomic: CAACTATTCCTAGCTGGTGGGAAGAATCTTGCTGGAAGTCTCACATATAGgtaatctatg ... tttctgacagGTATGACCTGGTTGACTTGACACGGCAAGTATTATCAAAATTGGCAAACCA
atggattaataaattgaaaagctgaatatcattagtgctgtcatctttctgacagGTATGACCTGGTTGACTTGACACGGCAAGTATTATCAAAATTGGCAAACCAGGTATACCACAAGGCAGTTACTTCTTATCAGAAGAAGAATATTGAAGCT
gattaat putative branch site (score: 3)
tcatctttct putative PPT
ttaataaattgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgaacatgtgaaatagaaagagcaaatgattgggtcaacaaaatggattaataaattgaaaagctgaatatcattagtgctgtcatctttctgacagGTATGACCTGGTTGACTTGACACGGCAAGTATTATCAAAATTGGCAAACCAGGTATACCACAAGGCAGTTACTTCTTATCAGAAGAAGAATATTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-aatgaac
- - - - - - - aatagaaa
- - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc