1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...actaatatctatcttattacttttttttttgttgatttccttttaatatggttttctcattctgtgcatgttactaattcgaaagttctttcatcttcagTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACCTACCAAA
species | Glycine max |
transcript | GLYMA10G00550.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTACTATCCAGATG TGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACCEST: gi|9983220|gb|BE657328.1|BE657328
genomic: CCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTACTATCCAGATGgtatggttct ... tcatcttcagTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACC
EST: CCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTACTATCCAGATG TGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACCEST: gi|213613591|gb|DB980457.1|DB980457
genomic: CCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTACTATCCAGATGgtatggttct ... tcatcttcagTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACC
EST: CAGAGGAG-TTTTTAGACCCATATGTCTGGCAGCTAGTACTATCCAGATG TGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACC
genomic: CAGAGGAGTTTTTTA-TCCCATATGTCTGGCAGCTAGTACTATCCAGATGgtatggttct ... tcatcttcagTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACC
atatggttttctcattctgtgcatgttactaattcgaaagttctttcatcttcagTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACCTACCAAA
tactaat putative branch site (score: 1)
ttctttcatcttc putative PPT
ttactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaatatctatcttattacttttttttttgttgatttccttttaatatggttttctcattctgtgcatgttactaattcgaaagttctttcatcttcagTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACCTACCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt