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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaattttttacaaccgtcatgcttagttgtcggattttgcttataaaatgatggggggactgtattcacgtcctcctgatatttttgaggtggtgaagactggcaccttgtttgaacttttcctatttcaacgttgtgctgctttgtcttaaacagaactttggagattgatataaacttttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCATCAGAGTCATTTGTTTTCGATGATATGCTTGAGT

Basic information

species Glycine max
transcript GLYMA09G32870.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963348|gb|BM270098.1|BM270098
EST:     TGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG                         GTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaatt ... tttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
EST: gi|7591109|gb|AW706849.1|AW706849
EST:     TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG                         GTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaatt ... tttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
EST: gi|120493682|gb|EH221849.1|EH221849
EST:     TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG                         GTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaatt ... tttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgctgctttgtcttaaacagaactttggagattgatataaacttttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCATCAGAGTCATTTGTTTTCGATGATATGCTTGAGT
                               gattgat  putative branch site (score: 4)
                                           cttttctgcc  putative PPT
                                attgatataaactttt  TA-rich tract