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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatctgataccatttgggggaatttgggaacttttgttactttttttagatcgttgtggcgaaaatacatttgaaatttatgggcattatgctgcatggatttttaaaggctgctagtttaagcagttacgcacatttttttcatcattcttatcttggttattctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC

Basic information

species Glycine max
transcript GLYMA09G00580.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207747473|gb|GD721648.1|GD721648
EST:     GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG                         GGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
genomic: GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGgtaagcaatc ... ctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
EST: gi|208295200|gb|GE095201.1|GE095201
EST:     GTTCG-CCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG                         GGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
genomic: GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGgtaagcaatc ... ctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
EST: gi|207815787|gb|GD786992.1|GD786992
EST:     GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG                         GGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
genomic: GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGgtaagcaatc ... ctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
EST: gi|193723143|gb|FK660085.1|FK660085
EST:     GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG                         GGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
genomic: GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGgtaagcaatc ... ctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
EST: gi|193731483|gb|FK663629.1|FK663629
EST:     GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG                         GGGTCAAGACTAAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTT
genomic: GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGgtaagcaatc ... ctttgaacagGGGTCAAGACT-AAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTT
EST: gi|208295251|gb|GE095224.1|GE095224
EST:     GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG                         GGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA
genomic: GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGgtaagcaatc ... ctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcagttacgcacatttttttcatcattcttatcttggttattctttgaacagGGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC
                                        ttattcttt  CT-rich tract
               atttttttcatcatt  TA-rich tract