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...tggtgttgttttgtagtttggacaaaatttgttaggatgtatatgcatttgttctattagtaaacttaactggatcatttattgaccttgtttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACC
species | Glycine max |
transcript | GLYMA08G23990.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|192305531|gb|FG998315.1|FG998315
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: CCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|57575332|gb|CX548307.1|CX548307
genomic: CCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: GGCTCGTG-AGTTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|7639458|gb|AW733780.1|AW733780
genomic: GGCTCGTGAAG-TTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|13787440|gb|BG650032.1|BG650032
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|58024853|gb|CX711594.1|CX711594
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTG-AGTTCTGCAAAGGGAAGATGACCTGAATGAAATGGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|192324960|gb|FK015411.1|FK015411
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|21676820|gb|BQ629171.1|BQ629171
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|12691488|gb|BG157824.1|BG157824
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: CCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|7042485|gb|AW472379.1|AW472379
genomic: CCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|58023444|gb|CX710185.1|CX710185
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|6724341|gb|AW308740.1|AW308740
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: TGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|192309103|gb|FG999386.1|FG999386
genomic: TGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|26268400|gb|CA819463.1|CA819463
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTEST: gi|57575633|gb|CX548608.1|CX548608
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
EST: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACTTGAATGAAATTGTTCAG CTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
genomic: AGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttc ... tttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACT
catttgttctattagtaaacttaactggatcatttattgaccttgtttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACC
ccttgttt CT-rich tract
tattagtaaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgttgttttgtagtttggacaaaatttgttaggatgtatatgcatttgttctattagtaaacttaactggatcatttattgaccttgtttaatccagCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-ggtgttg
- - - - - - - - - -ggacaaaa
- - - - - - - - - - - - - - - - - - - -tatatgc