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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaattattttattgcaaattggagagctggactctagaaatagtagttgcttgctaattgttgcctaatcttaaactttagGCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGTT

Basic information

species Glycine max
transcript GLYMA08G22910.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 15
gtaagttaattattttattgcaaattggagagctggactctagaaatagt---agttgcttg-----ctaattgttgcctaatcttaaactttagGCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGTT
||||||| ||||  ||   |  || || |       | | |  ||| | |   | | || |       | ||  |||| |  || | |  | ||||| |||||||||||||||||||||||||| || || || || ||||| ||||| |||||||||   |||||||| || || |||   |||||| || | |
gtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttt-tcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339430|gb|GR848147.1|GR848147
EST:     TGGATAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGGGGTCTCCCT                         GCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCT
genomic: TGGATAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaat ... taaactttagGCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggactctagaaatagtagttgcttgctaattgttgcctaatcttaaactttagGCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGTT
                                       taatcttaaacttta  TA-rich tract