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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatccaattacttgtttagtataatttcataatctacatcattaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA

Basic information

species Glycine max
transcript GLYMA08G21540.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 3'ss of exon 4
gtaaggatccaattacttgtttagtataatttc----ataatctacatc----attaacaatccatgac-----atacctacaaaggaagtt----------ctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA
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gtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTACTTCGGGATGTAACGGGTGCATTTAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA

upper sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
----------------gtaaggatccaattacttgtttagtata-atttcataa-------tctacatcattaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA
| | | | ||| || || |||||| | | || | | || | || || | | || | ||||| ||| | | ||||||||||| || |||||||||||||| || ||||| ||| ||||| ||| ||||| | | || |||||||||||||| |||||||| |||||||| |
gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaaccgccaacataa--ctaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA
                                              ctttcac  CT-rich tract