1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ccccccccccctttttccacgtctggctctggaaatactctcctgttcatgttggatttcctcttaatttttctctttttttgggtaatgttggtatcagGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTACGAAAGCGATTCCATCTCAGTTTAACTGAAGAG
species | Glycine max |
transcript | GLYMA08G16620.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCGCAAGCATGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAG GATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTAEST: gi|51338152|gb|CO982018.1|CO982018
genomic: CTTGCCGCAAGCATGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAGgtaatatgaa ... ttggtatcagGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTA
EST: CTTGCCGCAAGCATGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAG GATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTAEST: gi|9902125|gb|BE611093.1|BE611093
genomic: CTTGCCGCAAGCATGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAGgtaatatgaa ... ttggtatcagGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTA
EST: TCTTGTTGAGATGTTGCAG GATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTA
genomic: TCTTGTTGAGATGTTGCAGgtaatatgaa ... ttggtatcagGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTA
ttcatgttggatttcctcttaatttttctctttttttgggtaatgttggtatcagGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTACGAAAGCGATTCCATCTCAGTTTAACTGAAGAG
tcttaat putative branch site (score: 3)
tcttaatttttctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccccccccctttttccacgtctggctctggaaatactctcctgttcatgttggatttcctcttaatttttctctttttttgggtaatgttggtatcagGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTACGAAAGCGATTCCATCTCAGTTTAACTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ccccccc
- - - - - - - - ccacgtc
- - - - - - - - - - - - - ctctgga
- - - - - - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - tcatgtt