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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttgaatccagaattctcacttgtagttagttgttctttgatttatccttaataaagatgacacttgctcctaacaaacattatctctggcattttcagACACTGTCATCTGGACTGGATGATTATCCACGAGCTTCACACCCAAGTGAAGATGAACACCACTTGGATCTTAGATGTTGGATGTTACTTGCAGCAGACT

Basic information

species Glycine max
transcript GLYMA08G10870.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10870.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 14
gtttgaatccagaattctcacttgtagttagttgttctttgat--ttatccttaataaagatgacacttgctccta-acaaacattatctctggcattttcagACACTGTCATCTGGACTGGATGATTATCCACGAGCTTCACACCCAAGTGAAGATGAACACCACTTGGATCTTAGATGTTGGATGTTACTTGCAGCAGACT
     |    |  | | | |  |   ||| | | |     |||  || | |   ||| |||||     ||||  |  |   ||||| | ||   |||| | |||||||||| |||||  |||| ||||| |||||||| |||||||| |||| ||| || |||||  ||||||||||||| |||||| | |||||||| || |
--actatgttatcaatgttatgttaggttgggtatagaaagatattttttccagatagagatggt-tatgctgttgcattgacattgtttcgaacattcttagACACTGTCCTCTGGCTTGGACGATTACCCACGAGCATCACACCCTAGTGGAGAAGAGCACCATGTGGATCTTAGATGCTGGATGCTTCTTGCAGCTGAAT

upper sequence: GLYMA08G10870.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ24054 (Selaginella moellendorffii), 3'ss of exon 15
gtttgaatccagaattctcacttgtagttagttgttctttgatttatccttaataaagatgacacttgctcctaacaaacattat---ctctggcattttcagACACTGTCATCTGGACTGGATGATTATCCACGAGCTTCACACCCAAGTGAAGATGAACACCACTTGGATCTTAGATGTTGGATGTTACTTGCAGCAGACT
                                                     ||   | |   | | ||  | |  |||  | |   | | ||| |  | |||   |||| |||||  ||||||| ||||||||||||||||| |||||||  ||||| |  ||| | ||| |  | || ||||||    | |||||  | |
----------------------------------------------------gtaggcacgtttcattctg-tgattaacgctctagacaccggcttcgttagAGTTTGTCGTCTGGTTTGGATGACTATCCACGAGCTTCACATCCAAGTGCTGATGAGCGACACGTTGATTTACGTTGCTGGATGGCCTTGGCAGCGAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttaataaagatgacacttgctcctaacaaacattatctctggcattttcagACACTGTCATCTGGACTGGATGATTATCCACGAGCTTCACACCCAAGTGAAGATGAACACCACTTGGATCTTAGATGTTGGATGTTACTTGCAGCAGACT
                        tcctaac  putative branch site (score: 1)
                                              cattttc  putative PPT
     taataaagat  TA-rich tract