1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagtctctatttactatgtggagggtttgaccttttggtcaaagatgccttctcattttcttaaattttataataatcggaaatatctttgataatgatagGTTTAAAATTCAAGCCACCAAAGAGAGATTACATAGACAATACCCTTTGAATTGGCTGTGCTAAAAGGAAACTAGGAAATGCGGATTAAAATAAGGGTAC
species | Glycine max |
transcript | GLYMA08G08730.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCTGTATTGCATTGCACTTATTCTTCTTCTGATTCCTCATTCAACG GTTTAAAATTCAAGCCACCAAAGAGAGATTACATAGACAATACCCTTTGAAEST: gi|214004341|gb|DB985288.1|DB985288
genomic: TTTCTCTGTATTGCATTGCACTTATTCTTCTTCTGATTCCTCATTCAACGgtaagtctct ... ataatgatagGTTTAAAATTCAAGCCACCAAAGAGAGATTACATAGACAATACCCTTTGAA
EST: TTCTCTGTATTGCATTGCACTTACTT-TGCTTCTGATTCCTCATTCAACG GTTTAAAATTCAAGAGTA-CAAAGAGAGATTACATAGACAATACCCTTTGAEST: gi|214005807|gb|DB985955.1|DB985955
genomic: TTCTCTGTATTGCATTGCACTTA-TTCTTCTTCTGATTCCTCATTCAACGgtaagtctct ... ataatgatagGTTTAAAATTCAAG-CCACCAAAGAGAGATTACATAGACAATACCCTTTGA
EST: TTTCTCTGTATTGCATTGCACTTATTCTTCTTCTGATTCCTCATTCAACG GTTTAAAATTCAAGCGC-CCAAAGAGAGATTACATAGAAAAAACCCTTTGA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTTCTTCTGATTCCTCATTCAACGgtaagtctct ... ataatgatagGTTTAAAATTCAAGC-CACCAAAGAGAGATTACATAGACAATACCCTTTGA
gccttctcattttcttaaattttataataatcggaaatatctttgataatgatagGTTTAAAATTCAAGCCACCAAAGAGAGATTACATAGACAATACCCTTTGAATTGGCTGTGCTAAAAGGAAACTAGGAAATGCGGATTAAAATAAGGGTAC
ctttgat putative branch site (score: 5)
attttcttaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctctatttactatgtggagggtttgaccttttggtcaaagatgccttctcattttcttaaattttataataatcggaaatatctttgataatgatagGTTTAAAATTCAAGCCACCAAAGAGAGATTACATAGACAATACCCTTTGAATTGGCTGTGCTAAAAGGAAACTAGGAAATGCGGATTAAAATAAGGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA