Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatatggttgacaccttcattagctagatcactatgtcctatggtatgggtatatattttatttagtgtactttggtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCA

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285978|gb|BI469869.1|BI469869
EST:     CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAG                         CCTTCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCTAATCTGTT
genomic: CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAGgtatatatat ... gtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
EST: gi|9440008|gb|BE440519.1|BE440519
EST:     CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAG                         CCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
genomic: CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAGgtatatatat ... gtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
EST: gi|16349201|gb|BI974796.1|BI974796
EST:     CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAG                         CCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
genomic: CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAGgtatatatat ... gtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
EST: gi|16347149|gb|BI972744.1|BI972744
EST:     CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAG                         CCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
genomic: CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAGgtatatatat ... gtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
EST: gi|21887251|gb|BQ740464.1|BQ740464
EST:     CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAG                         CCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT
genomic: CTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAGgtatatatat ... gtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatgtcctatggtatgggtatatattttatttagtgtactttggtttttgtagCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCA
                                              tttttgt  CT-rich tract
                    tatatattttatttag  TA-rich tract