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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctcttcaaatatctgatgtttttgacaatccatgtattataatgacccagttttaattgggggaatatttaatcattaaattttaaaattttggtgctgcatcgtgtagAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTTCTTAGGGATTCAACTGGAA

Basic information

species Glycine max
transcript GLYMA08G05480.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05480.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G373175_T01 (Zea mays), 3'ss of exon 16
gtaagtttctcttcaaatatctgatgtttttgacaatccatgtattata-atgacccagttttaattgggggaatatttaatcattaaattttaaaattttggtgctgcatcgtgtagAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTTCTTAGGGATTCAACTGGAA
                               |  | |   ||| || || || ||   | | ||  |  | |  |  |||  | | | | ||| |    ||  || |   |  |  |||| || || ||||||   |   ||   ||||||||||| ||| |||| || ||||| ||||||||||||||||| || || ||  ||||||||||||  |
-------------------------------gtaagtttttgtgttctacataactttgatatatatcagtggct--tta--cgtgacagtttca----tttatgttatcttttccagAGTTCAGTTAATGGTAAAGAAACCAAGATTCCATTCCCCTGGCTAGTTTTCAATGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTA

upper sequence: GLYMA08G05480.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtttctcttcaaatatctga-----tgtttttgacaatccat-----------gtattataatgacccag-ttttaattgg----gggaatatttaatcattaaattttaaaattttggtgctgcatcgt---------gtagAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTTCTTAGGGATTCAACTGGAA
||||||| || | |   |   | |     | || |  | |  ||||           | ||| ||| ||  ||  ||||  || |      || | | |  || ||   |||    | ||  |  ||||||             ||||  || || ||||   | |   |   |||||||| ||| |||||||| || |||||||||||||| ||||||||||| || ||  | ||||| ||||   
gtaagttgctttgctgttccataaagcgttattatgcatatcccatcattgaattcagaattgtaaagaatcaaattttccttcgcaacaagattttcttttcttttcttttctttaattgtggactgcatttcctttttttcatagAATTCGGTGAATGCCCGGGAACCTAAAATTCCATACCCGTGGTTAGTTTTCAATGAAAAGGTGAAGGTGAATTCAGTTTTCCTCCGTGATTCCACTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208159530|gb|GD955279.1|GD955279
EST:     AGTCAATAGCGCTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCT                         AGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTT
genomic: AGTCAATAGCGCTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCTgtaagtttct ... catcgtgtagAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTT
EST: gi|214008597|gb|DB987460.1|DB987460
EST:     AGTCAATAGCGCTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCT                         AGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTT
genomic: AGTCAATAGCGCTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCTgtaagtttct ... catcgtgtagAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgggggaatatttaatcattaaattttaaaattttggtgctgcatcgtgtagAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTTCTTAGGGATTCAACTGGAA
         aatatttaatcattaa  TA-rich tract