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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccataactaacttccttgtgaatttcagggatactcattacctttggaatgttaccatcaaatttaactttgaattttgtgagctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATT

Basic information

species Glycine max
transcript GLYMA08G03550.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03550.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 3'ss of exon 12
gtccataactaacttccttgtgaatttcagggatactcattacctttggaatgttaccat-caaatttaactttgaa---ttttgtgagctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATT
     || |  |   | || || ||| |     |  |  ||     ||   ||| |   | |   |||  | |||||   | |  | |  |   || |  ||||||| || ||    || |||||||   |||||||||||||| ||||||||  ||| || || || ||||||||||||||||||||||| ||  
----gtagcagaa--cattctgcattcctaatttgtttctttaagctgtggtgtgattgttctggtttttcgttgaaatctctcctcatgtggtagGTACTGGAAACCAATAGGGCCGAAGAATCTCACTGTCATGTGCACAGGATGTATTTCATGGGTCCCAACACCTTCAGTGAACCTTGGCATCTACCACACA

upper sequence: GLYMA08G03550.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 3'ss of exon 14
gtccataactaacttccttgtgaatttcagggatactcattacctttggaatgttaccatcaaatttaactttgaattttgtgagctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATT
||   | |   ||  | |     || |   |    |  || ||| |      |||  |||  || ||   ||||   |||||     | ||| |  ||||||| || ||   ||||||||| |   | ||||| |||||| ||||||||  |||||| || || |||||||||||||||||||| || ||  
gtattttatacaccgcttccgtcatgttgtgtgc-catatgaccatcatgg-gttctcatagaagttttttttg---tttgt-----tgcagGTCTTGGAAACTAATAGGGCTGAGGAATCGCATGGGCATGTACACAGGATGTATTTCATGGGCCCCAACACCTTCAGTGAACCTTGGCATCTCCCACACA

upper sequence: GLYMA08G03550.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G350818_T02 (Zea mays), 3'ss of exon 7
gtccataactaacttccttgtgaatttcagggatactcattac-ctttggaatgttaccatcaaatttaactttgaattttgtgagc-tttcagATTATGGAAACAAACAGAAGTGAGGAATCTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATT
          || | | || ||   | | |     || | ||  |  |||  || |    || ||| | |||   | || ||  |   |  ||| |  |||||||||||||    || |||||||   |||||||||||||| ||||||||  ||||||||| || |||||||||||||||||||| || ||  
-------gtgaaatccattctgttgtgctgattcccttaataagccgtggtgtggtcatttctaatgttactgaaatttctgctattgtggcagGTATTGGAAACAAACAGGGCAGAAGAATCTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACA

upper sequence: GLYMA08G03550.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G412234_T01 (Zea mays), 3'ss of exon 4
gtccataactaacttccttgtgaatttcagggatactcattacctt---tggaatgttaccatcaaatttaactttgaattttgtgagctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATT
             | | |  |   |||   | |||   |  | |||   ||  |||   |     ||||    |   ||  |  | |     ||| | || ||||| || ||   ||| || || |   ||||||| |||||| ||||||||  ||| || || || |||||||||||||||||||| || ||  
------------gtacttcataccttttctgcatagataacatcttgaatgccatgcacctccagaattctgataaaaaaatgataattacacagGTCATTGAAACTAATAGGGCTGAAGAGTCACAAGGTCATGTACACAGGATGTATTTCATGGGTCCCAACACCTTCAGTGAACCTTGGCATCTCCCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattacctttggaatgttaccatcaaatttaactttgaattttgtgagctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATT
                          atttaac  putative branch site (score: 3)
                                                ctttc  putative PPT
                     atcaaatttaactttg  TA-rich tract