Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccttgttgctctgcagtatcggttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACGGAGAGCAGAAAGATACTTGGTTGTTGGTGCTGTCCGGTTCGTTCGAACT

Basic information

species Glycine max
transcript GLYMA07G37040.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15200487|gb|BI424374.1|BI424374
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
EST: gi|193670142|gb|FK608654.1|FK608654
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
EST: gi|193609882|gb|FK563444.1|FK563444
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTG
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTG
EST: gi|208237021|gb|GE034301.1|GE034301
EST:     TCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
genomic: TCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
EST: gi|193673711|gb|FK617264.1|FK617264
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATT
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATT
EST: gi|207737399|gb|GD714085.1|GD714085
EST:     TGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATAATTGCTATCGACAC
genomic: TGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAAT-ATTGCTATTGACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACGGAGAGCAGAAAGATACTTGGTTGTTGGTGCTGTCCGGTTCGTTCGAACT
 ggttgac  putative branch site (score: 4)
                                    ttctctttgctgtttt  putative PPT
                     aaattatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttccttgttgctctgcagtatcggttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACGGAGAGCAGAAAGATACTTGGTTGTTGGTGCTGTCCGGTTCGTTCGAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG