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gtaataaccattttcctgtgttttttttccaaccaagataataattaataaattacttgattcttgagtttgtttgatattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGAC
species | Glycine max |
transcript | GLYMA07G36680.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATGATCTCTTACTAACAAG GCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCAEST: gi|207714662|gb|GD695959.1|GD695959
genomic: ATGATCTC-TAC-AACAAGgtaataacca ... tattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCA
EST: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAG GCTCAAGAGCATGATATTTATGATEST: gi|9984381|gb|BE658489.1|BE658489
genomic: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAGgtaataacca ... tattctgcagGCTCAAGAGCATGATATTTATGAT
EST: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAG GCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACEST: gi|6227575|gb|AW156174.1|AW156174
genomic: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAGgtaataacca ... tattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCAC
EST: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAG GCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACEST: gi|209706520|gb|BW667797.1|BW667797
genomic: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAGgtaataacca ... tattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCAC
EST: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAG GCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCAC
genomic: CTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAGgtaataacca ... tattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCAC
ccaagataataattaataaattacttgattcttgagtttgtttgatattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGAC
ataataattaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaccattttcctgtgttttttttccaaccaagataataattaataaattacttgattcttgagtttgtttgatattctgcagGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC