1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...gatcgaaagtgacttcattttataatcctgcccttggtatccttatatttgttgcttgagatttactaattctcggtatactgaatgttaatgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAG
species | Glycine max |
transcript | GLYMA07G36390.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAG GAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATEST: gi|7285151|gb|AW597638.1|AW597638
genomic: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGgtcatagtaa ... atgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACAT
EST: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAG GAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATEST: gi|6502408|gb|AW203781.1|AW203781
genomic: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGgtcatagtaa ... atgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACAT
EST: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAG GAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATEST: gi|192326538|gb|FK018470.1|FK018470
genomic: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGgtcatagtaa ... atgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACAT
EST: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAG GAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATEST: gi|19271331|gb|BM887587.1|BM887587
genomic: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGgtcatagtaa ... atgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACAT
EST: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAG GAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACAT
genomic: TGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGgtcatagtaa ... atgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACAT
tatttgttgcttgagatttactaattctcggtatactgaatgttaatgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAG
atttactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcgaaagtgacttcattttataatcctgcccttggtatccttatatttgttgcttgagatttactaattctcggtatactgaatgttaatgcatttagGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - gtgactt
- - - - - - - - - - - - - cctgccc
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt