1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...acggaatttgattttttaaacatctcatttggattgggaattgggactacagaaataatttacattgatcagctcatctatttagtttaaacttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTAGTCAATAGAGCG
species | Glycine max |
transcript | GLYMA07G32480.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGG AGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAAEST: gi|31474112|gb|CD416140.1|CD416140
genomic: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGGgtatgttatc ... acttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAA
EST: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATTTACTGCACCAGCTGCTGG AGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAAEST: gi|6725921|gb|AW310320.1|AW310320
genomic: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGGgtatgttatc ... acttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAA
EST: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGG AGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAAEST: gi|31467136|gb|CD409164.1|CD409164
genomic: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGGgtatgttatc ... acttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAA
EST: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGG AGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAA
genomic: CTCTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCAGCTGCTGGgtatgttatc ... acttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAA
actacagaaataatttacattgatcagctcatctatttagtttaaacttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTAGTCAATAGAGCG
cattgat putative branch site (score: 4)
cttctgc putative PPT
aaataatttacattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggaatttgattttttaaacatctcatttggattgggaattgggactacagaaataatttacattgatcagctcatctatttagtttaaacttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGCATCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTAGTCAATAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - gactaca