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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttttaactttcgacttgggaagatcaagtgtattattccttcttcattcttacacatgttactgttaatttaattgataaagaatcctccttttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG

Basic information

species Glycine max
transcript GLYMA07G09890.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09890.1 (Glycine max), 3'ss of exon 17
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 3'ss of exon 17
agttttaactttcgacttgggaagatcaagtgtattattccttcttcattcttacacatgttactgttaatttaattgataaagaatcctccttttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG
           |   | |       |||||| ||||     |  | |    | ||| |  || | |||| ||| | |  | | || |    ||||  ||| || ||  | || || || ||||| || || || ||||||||  || | |||||||| ||||||||||| |||||||||  ||||||||| ||
----------gtaatcctcttgctctcaagtttattcacattcatactcgatcacagaattttcggttattttcaatt-tcatgattggatcttt--cagATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGCACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAG

upper sequence: GLYMA07G09890.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 17
agttttaactttcgacttgggaagatcaagtgtattattccttcttcattcttacacatgtta--ctgttaatttaattgataaagaatcctccttttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG
 ||   ||  ||  |  |     ||  |  |||  |        || |||| | | |  || |   | || |||   ||  | || | ||   || |||||| |||||||| || ||||| ||||| ||||||||||| || ||| || |||| |||||||| || ||| ||||||| ||||| ||  |||||||
tgtcccaatgttacaaatcatttgaatagctgtccttcaaagagtttattcattctccagtcaaattttttattcctttacttaaaattc--tctgttgcagATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7639733|gb|AW734049.1|AW734049
EST:     AGAAGATATATGAGGATGATATAAATCCTTTTGCTGCATTCTCAAAAAAG                         GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT
genomic: AGAAGATATATGAGGATGATATAAATCCTTTTGCTGCATTCTCAAAAAAGgtgacttagc ... ccttttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattcttacacatgttactgttaatttaattgataaagaatcctccttttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG
                                         tcctccttttgc  CT-rich tract
               ttactgttaatttaat  TA-rich tract