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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggttgacaatcttgttcaaatgtccaaaacattttagcaatatatcaattgtgaaacttctgtttgtgtttcaaaattaattagtacattgacattttaattaatgacctgtaattcttctttatgtagGAAAAGAAACACCTTGGTTGGCTTCGACTGATTGTATGTATGAATCAGCTGAACCTGTTTTCCTTGAACTTCATGCAACAGCAATGCTCTGCTTGCCATC

Basic information

species Glycine max
transcript GLYMA07G04680.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934862|gb|BQ079892.1|BQ079892
EST:     CATTTCAGCTGCCAAGGAAACACTGAGTGCATCCCTTTCACTACTAAAAA                         GAAAAGAAACACCTTGGTTGGCTTCGACTGATTGTATGTATGAATCAGCTG
genomic: CATTTCAGCTGCCAAGGAAACACTGAGTGCATCCCTTTCACTACTAAAAAgtaagttggt ... ctttatgtagGAAAAGAAACACCTTGGTTGGCTTCGACTGATTGTATGTATGAATCAGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaattagtacattgacattttaattaatgacctgtaattcttctttatgtagGAAAAGAAACACCTTGGTTGGCTTCGACTGATTGTATGTATGAATCAGCTGAACCTGTTTTCCTTGAACTTCATGCAACAGCAATGCTCTGCTTGCCATC
                        aattaat  putative branch site (score: 3)
                                        ttcttctttat  putative PPT
          tacattgacattttaa  TA-rich tract