Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattatatcatcgcattcactacactgagtttatttatgaagtgcacaagtatgtgtaatttcagtgggttaaaatcatgttgtatcttaaattaaatcaagggtgaatacaagtcttgtgcattttaaagacaaacagtctttggctattattattgatttaactattttgttgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACATGACAAGAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGAT

Basic information

species Glycine max
transcript GLYMA07G01190.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338205|gb|CO982071.1|CO982071
EST:     ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAG                         TGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
genomic: ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAGgtaaaattat ... tgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
EST: gi|18040485|gb|BM308779.1|BM308779
EST:     ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAG                         TGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
genomic: ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAGgtaaaattat ... tgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
EST: gi|22525526|gb|BU084337.1|BU084337
EST:     ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAG                         TGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
genomic: ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAGgtaaaattat ... tgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
EST: gi|18714477|gb|BM522781.1|BM522781
EST:     TCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAG                         TGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
genomic: TCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAGgtaaaattat ... tgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
EST: gi|298171846|gb|HO021438.1|HO021438
EST:     ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAG                         TGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA
genomic: ATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAGgtaaaattat ... tgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagacaaacagtctttggctattattattgatttaactattttgttgtcatgcagTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACATGACAAGAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGAT
                              atttaac  putative branch site (score: 3)
                                       ttttgtt  putative PPT
                   tattattattgattta  TA-rich tract