1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtgttctgtttttctctaaattttttgaaatcttgttagtaatattatttgttgagatacatattacttactatttgcaaatgcattttttaaaatatattcttgcttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAGGTGCTTGCATTTGCTGCTATTTCTTTGGGCTTGATCTATGTGGGTTCTT
species | Glycine max |
transcript | GLYMA06G44340.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGAACGTATTCTAAAGCTTCACTTGAEST: gi|193700466|gb|FK639057.1|FK639057
genomic: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACG-ATTCTAAAGCTTCACTTGA
EST: AATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAGEST: gi|208298033|gb|GE093248.1|GE093248
genomic: AATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAG
EST: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGAACGGTTCTAAAGCTTCACTTGAGEST: gi|193344460|gb|FK311212.1|FK311212
genomic: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAG
EST: GCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGGACGATTCTAAAGCTTCACTTGAGEST: gi|193426783|gb|FK392568.1|FK392568
genomic: GCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAG
EST: TGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAAGCAG TTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAEST: gi|193340253|gb|FK307874.1|FK307874
genomic: TGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATG-AGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGA
EST: GCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGGACGATTCTAAAGCTTCACTTGAGEST: gi|193493116|gb|FK460902.1|FK460902
genomic: GCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAG
EST: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAGEST: gi|193481819|gb|FK446938.1|FK446938
genomic: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAG
EST: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAG TTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAGEST: gi|208067895|gb|GD861405.1|GD861405
genomic: GTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtt ... cttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAG
EST: GCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAAGACAG TTACGGGAGAAATT
genomic: GCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGA-G-CAGgtgttctgtt ... cttctttcagTTACGGGAGAAATT
atattacttactatttgcaaatgcattttttaaaatatattcttgcttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAGGTGCTTGCATTTGCTGCTATTTCTTTGGGCTTGATCTATGTGGGTTCTT
tacttac putative branch site (score: 1)
tattcttgcttctttc putative PPT
ttactatttgcaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttctgtttttctctaaattttttgaaatcttgttagtaatattatttgttgagatacatattacttactatttgcaaatgcattttttaaaatatattcttgcttctttcagTTACGGGAGAAATTGACAGGTGTACTGAACGATTCTAAAGCTTCACTTGAGGTGCTTGCATTTGCTGCTATTTCTTTGGGCTTGATCTATGTGGGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT