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gtacctgtcattttttttatgtaaaacatatttgaaagttacctggtaatccaggacataatgctgtataaatttgttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCAATCAAAAGTTGATATTCTAATTTCTTTTGGATTTGAAGAAGAAATTGC
species | Glycine max |
transcript | GLYMA06G39770.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAG ACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCEST: gi|193541662|gb|FK497062.1|FK497062
genomic: TGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAGgtacctgtca ... ttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACC
EST: TGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAG ACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCEST: gi|192317822|gb|FK010184.1|FK010184
genomic: TGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAGgtacctgtca ... ttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACC
EST: TGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAG ACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCEST: gi|208190086|gb|GD990048.1|GD990048
genomic: TGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAGgtacctgtca ... ttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACC
EST: TGGTTGTTATCTCACATGGATGATCCAG ACATTGACAGTCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACC
genomic: TGGTTGTTATCTCACATGGATGATCCAGgtacctgtca ... ttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACC
ttgaaagttacctggtaatccaggacataatgctgtataaatttgttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCAATCAAAAGTTGATATTCTAATTTCTTTTGGATTTGAAGAAGAAATTGC
tttgtttt CT-rich tract
tgtataaatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctgtcattttttttatgtaaaacatatttgaaagttacctggtaatccaggacataatgctgtataaatttgttttacgtagACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCAATCAAAAGTTGATATTCTAATTTCTTTTGGATTTGAAGAAGAAATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA