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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaatactaatattagttactctcttaactgtatttttttttcgcctgtttgctacattttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT

Basic information

species Glycine max
transcript GLYMA06G15820.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
-----gtttcaatactaatattagtt--actctcttaactgtatttttttttcgcctgtttgctacatt-ttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT
      ||| |||  ||  || | ||      |    | | |||||||     |   ||     ||| | ||| ||   |  | |||||||||||||||||||||||| ||||| || ||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||
gtttgattttaattttatcatcattttagtattagctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT

upper sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 3'ss of exon 15
------------gtttcaata--ctaatattagttactctcttaactgtatttt---tttttcgcctg--tttgctacattttttttctctcttg-gcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT
               | | ||  |  ||||||  |  |   |    |||||  |   | || ||| ||   |   |    |||| ||   |  || ||||||||| ||||| |  ||| |    || |||   |  |||||||||||||||||||||||||| ||||||||||| |||| |||| |||| || ||  | |
gacaagagattgacatgagtagccatatattaagtggtacatccgatgtatgatggatgttacgcttgaactaattgggattttattgcatgctgtgcagCAATGCGTATCATCTGTGTTGGAGCTTATTGCTAAAAGCCTGGATGCATGGCGGACACGGCAATATGATTATTATCAGAAGGTTCTGAATGGTATTCTTT

upper sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 3'ss of exon 15
------------------gtttcaatactaatattagttactctcttaactgtattttt---ttttcgcctgtttgctacattttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT
                   | | | ||| |||      |  || |  || ||| ||| |    |||  |||       ||||| |  | |  | |   |||||||| ||||| |  ||  |    || ||    |  || ||||||||||||||||||||||||||||||||||| |||| ||| ||||| || ||  | |
acttttgtttggcaatgcatctgattacgaattggcaatgttc-cgaaattgtttttgtgaactttttccttcagctgacattatactgccttttgttcagCAATGCGTATCATCAGTTTTGGAGCTTATCGCTAAAAGTCTGGATGCATGGCGGACACGGCAGTATGATTATTATCAGAAGGTGTTGAATGGTATTCTTT

upper sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
gtttcaatactaatattagttactctcttaactgtatttttttttcgcctgtttgctacattttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT
        | | ||  |||  ||| |   |||| | |||  || |   |    || |   | ||| ||   ||||||||||||||||| || |||||  | || ||||| ||||||||| | ||||| ||||| || |||||||||||||| || ||  | |||||||| || ||    |
-----gtgagttatcctaga-actttgcaaactttgtttcgttcttctca---tggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT

upper sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ06373 (Selaginella moellendorffii), 3'ss of exon 17
gtttcaatactaatattagttactctcttaactgtatttttttttcgcctgtttgctacattttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT
        | | ||  |||  ||| |   |||| | | |  || |   |    || |   | ||| ||   |||||||||||||| || || |||||  | || ||||| ||||||||| | ||||| ||||| || |||||||||||||| || ||  | |||||||| || ||    |
-----gtgagttatcctaga-actttgcaaactttgtctcgttcttctca---tggtttttctttgtttgttcttggcagCAATGCGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaactgtatttttttttcgcctgtttgctacattttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT
 tcttaac  putative branch site (score: 2)
           tttttttttcgcctgt  putative PPT
     actgtattttttttt  TA-rich tract