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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacagcattataccactccattttctcatatataatattgaggcaacaagaccctatttttatgttgtacttgctaatttaccttgtattttctgcatatggtgttttgaatgtatatcttcttttctgtttgacacccttaatatttgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAGGTTGGGTCAACTATAGA

Basic information

species Glycine max
transcript GLYMA06G05890.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05890.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv04s0008g01960.t01 (Vitis vinifera), 3'ss of exon 16
gtgaacagcattataccactccattttctcatatataatattgaggcaacaagaccctatttttatgttgtacttgctaatttaccttgtattttctgcatatggtgttttgaatgtatatcttcttttctgtt-tgacacccttaatatttgaatca-cagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCA-GATCTCTAGAAAGGTTGGGTC-AACTATAGA
                               |   |||       |    |  | || | | || | ||| | |  | ||    | |      |     ||||| | |||  ||   | || |||  || | || ||  |    |||||||||  |    ||| ||  |||||||||||||||| || ||||| ||   ||||||  ||||||| ||||||||||||||| |  |   |  |||| | | | || | || ||  
------------------------------gtgagtaaagacactgt--tagtatcccactatt-tcttggaatgacaaacaatcttcaatcgtctcttatatgatatttaaaaaagaaatgttccattttcttatggta----taatatttggtttggtagGTGGGTTGATGGCTCTGAGCTCAATATTCGTAGTGACCAACTCGGTGCTTCTGCAGCTTCATGGGTCTGACAAGAACAGGAAAAGCTAGCTCTAGCTCTA--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336697|gb|CO980563.1|CO980563
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|31471926|gb|CD413954.1|CD413954
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCTATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|31466394|gb|CD408422.1|CD408422
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|209700681|gb|BW673038.1|BW673038
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|26269242|gb|CA820305.1|CA820305
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|120531112|gb|EH259245.1|EH259245
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|31561316|gb|CD487154.1|CD487154
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|120533209|gb|EH261342.1|EH261342
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|17400756|gb|BM177538.1|BM177538
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|120533361|gb|EH261494.1|EH261494
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|31305210|gb|CD390413.1|CD390413
EST:     TGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
EST: gi|31309110|gb|CD394313.1|CD394313
EST:     TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAG                         GAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC
genomic: TGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacagca ... tgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgaatgtatatcttcttttctgtttgacacccttaatatttgaatcacagGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAGGTTGGGTCAACTATAGA
                                   ccttaat  putative branch site (score: 4)
                                     ttaatatttgaatca  TA-rich tract