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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttctcaaatatctgatgtttttgataatccatctattcttattacccagttttaattgggggaatatttaatccattaaattttaaaaatttggtgctgcatcatgtagAGCTCTGTAAATGGTTGTGTACCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTA

Basic information

species Glycine max
transcript GLYMA05G34180.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34180.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G373175_T01 (Zea mays), 3'ss of exon 16
gtaagcttctcaaatatctgatgtttttgataatccatctattcttattacccagttttaat-tgggggaatatttaatccattaaattttaaaaatttggtgctgcatcatgtagAGCTCTGTAAATGGTTGTGTACCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTA
                                 |   | | |   |  |||  |  ||| || |     | |   |  | | | | | ||| |    ||  || |   |  |  |||| || || ||||||   | | ||   ||||||||||| ||| |||| || ||||| ||||||||||||||||| || |||||  |||||||||||| ||
--------------------------------gtaagtttttgtgttctacataactttgatatatatcagtggctt-tacgtgacagtttca----tttatgttatcttttccagAGTTCAGTTAATGGTAAAGAAACCAAGATTCCATTCCCCTGGCTAGTTTTCAATGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTA

upper sequence: GLYMA05G34180.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 15
-----------------------------------gtaagcttctcaaat--atctgatgtttttgataatccatctattcttattacccagttttaattgggggaatatttaatccattaaattttaaaaatttggtgctgcatcatgtagAGCTCTGTAAATGGTTGTGTACCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTA
                                   | |     |   | |  ||      || |  | |||| |  | | |||   | | || |||  ||         |||  |   || |||| |  |       | ||   |    ||||  || || ||||   | | |||   |||||||| ||| |||||||| || |||||||||||||| ||||||||||| |||||  | ||||| |||| | 
gtaagttgctttgctgttccataaagcgttattatgcatatcccatcattgaattcagaattgtaaagaatcaaattttccttcgcaacaagattttctttt-----cttttcttttctttaattgtggactgcatttcctttttttcatagAATTCGGTGAATGCCCGGGAACCTAAAATTCCATACCCGTGGTTAGTTTTCAATGAAAAGGTGAAGGTGAATTCAGTTTTCCTCCGTGATTCCACTGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgggggaatatttaatccattaaattttaaaaatttggtgctgcatcatgtagAGCTCTGTAAATGGTTGTGTACCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTA
        aatatttaatccatta  TA-rich tract