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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaattgctattcacccctttgcttgaattgcttgcaaaggcatatacttttatatacattcaatgatacctaataaacaaacttctctgattttgtttcctttgtgaaaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGACAACAGGCCCTTGACAATTTGGTTCCGTTCCAGGGCGAAGCTCGAACCA

Basic information

species Glycine max
transcript GLYMA05G33320.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193448221|gb|FK416404.1|FK416404
EST:     CTCTAGTAGCTGTGGATTCGGAGATCGGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAG
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTA-GAAAAAAGGAATAGGTGGGACGGAAAAGAAAG
EST: gi|193617437|gb|FK566605.1|FK566605
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAAGAAAAAAGGA-TAGGTGGGACGGAAAAGAAAG
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTA-GAAAAAAGGAATAGGTGGGACGGAAAAGAAAG
EST: gi|19452967|gb|BM954377.1|BM954377
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
EST: gi|193670068|gb|FK609406.1|FK609406
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
EST: gi|17400421|gb|BM177203.1|BM177203
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
EST: gi|208301907|gb|GE099473.1|GE099473
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGG
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGG
EST: gi|208070857|gb|GD870162.1|GD870162
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatacctaataaacaaacttctctgattttgtttcctttgtgaaaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGACAACAGGCCCTTGACAATTTGGTTCCGTTCCAGGGCGAAGCTCGAACCA
                                                tttcc  CT-rich tract
        taataaacaaactt  TA-rich tract