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gtaaatcacttgctgcctctatataatcctaatctgcctcaatttttaattttccagaagtttcttatttttagtccaataaactctatcaagtatggcatttgactgccaaaattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATG
species | Glycine max |
transcript | GLYMA05G30000.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGAT GCATCTCCGGTGTTCACCTTTGCEST: gi|10237301|gb|BE806189.1|BE806189
genomic: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATgtaaatcact ... aattatgcagGCATCTCCGGTGTTCACCTTTGC
EST: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGAT GCATCTCCGGTGTTCACCTTTGCTAACCAAGCTGGACTTGACATGEST: gi|21638676|gb|BM139722.1|BM139722
genomic: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATgtaaatcact ... aattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATG
EST: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGAT GCATCTCCGGTGCTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTAAAEST: gi|192317305|gb|FK010536.1|FK010536
genomic: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATgtaaatcact ... aattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAA
EST: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGAT GCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGATTTGACATGCTTGAAEST: gi|192317304|gb|FK010535.1|FK010535
genomic: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATgtaaatcact ... aattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAA
EST: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGAT GCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGAEST: gi|192302385|gb|FG995897.1|FG995897
genomic: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATgtaaatcact ... aattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGA
EST: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGAT GCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAA
genomic: AACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATgtaaatcact ... aattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAA
tttttagtccaataaactctatcaagtatggcatttgactgccaaaattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATG
atttgac putative branch site (score: 4)
aaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcacttgctgcctctatataatcctaatctgcctcaatttttaattttccagaagtttcttatttttagtccaataaactctatcaagtatggcatttgactgccaaaattatgcagGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA