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gtatgtatttagttaaatatcaacagttgttgacttcaagatatagcttccttcttatacagctgtctgagctataagttttatttttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGCTTGTCAAGGATGAAAGTCAAAATGAGGATTAAAGTATAACTGAATCTA
species | Glycine max |
transcript | GLYMA05G29870.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|57575315|gb|CX548290.1|CX548290
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|193550064|gb|FK505547.1|FK505547
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: GGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|192324819|gb|FK018795.1|FK018795
genomic: GGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: AGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|23727410|gb|BU761735.1|BU761735
genomic: AGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|57575079|gb|CX548054.1|CX548054
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|22932667|gb|BU549806.1|BU549806
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|7589348|gb|AW705124.1|AW705124
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|31473682|gb|CD415710.1|CD415710
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: GTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|151401732|gb|EV271545.1|EV271545
genomic: GTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: AGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|58018371|gb|CX705113.1|CX705113
genomic: AGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|58016681|gb|CX703423.1|CX703423
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|298170514|gb|HO019138.1|HO019138
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|58016928|gb|CX703670.1|CX703670
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGEST: gi|254334340|gb|GR844125.1|GR844125
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
EST: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG TTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
genomic: TGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAGgtatgtattt ... tttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAG
atatagcttccttcttatacagctgtctgagctataagttttatttttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGCTTGTCAAGGATGAAAGTCAAAATGAGGATTAAAGTATAACTGAATCTA
ttttatttttttccc CT-rich tract
agctataagttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatttagttaaatatcaacagttgttgacttcaagatatagcttccttcttatacagctgtctgagctataagttttatttttttcccagTTTGCAACTGAAGCTGCTATTACCATCCTTCGAATTGATGACATGATCAAGCTTGTCAAGGATGAAAGTCAAAATGAGGATTAAAGTATAACTGAATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT