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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactctttgtttttctaggttaccatttttttgtgcagtgataattttgaaggcattttatcaacttcattcttttatataccaattgagcagGTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAGGTAAGCATTAGGCACCCTCTGTTTGTTGACATT

Basic information

species Glycine max
transcript GLYMA05G28950.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677277|gb|BQ629628.1|BQ629628
EST:     ATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTGTTAA                         GTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGATGAGAC
genomic: ATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTGTTAAgtaagcactc ... aattgagcagGTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGATGAGAC
EST: gi|21887848|gb|BQ741061.1|BQ741061
EST:     ATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTGTTAA                         GTATTATGATACCTATCTCCCATTC
genomic: ATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTGTTAAgtaagcactc ... aattgagcagGTATTATGATACCTATCTCCCATTC
EST: gi|17153820|gb|BM143753.1|BM143753
EST:     ATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTGTTAA                         GTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGAT
genomic: ATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTGTTAAgtaagcactc ... aattgagcagGTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataattttgaaggcattttatcaacttcattcttttatataccaattgagcagGTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAGGTAAGCATTAGGCACCCTCTGTTTGTTGACATT
                attttatcaacttcat  TA-rich tract