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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgttttcgtgagaaacaagatcttatatcattagcttaaccaattttatctagctaatgtttcttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGGAAAAACATGCAAGGACAGAGAATGTAACCTGTGTTGGTTTCAGTCAGAA

Basic information

species Glycine max
transcript GLYMA04G35870.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815851|gb|BI788126.1|BI788126
EST:     TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAG                         GTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
genomic: TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGgtaactgttt ... cttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
EST: gi|22929735|gb|BU546874.1|BU546874
EST:     TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAG                         GTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
genomic: TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGgtaactgttt ... cttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
EST: gi|13311298|gb|BG404949.1|BG404949
EST:     TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAG                         GTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
genomic: TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGgtaactgttt ... cttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
EST: gi|208051001|gb|GD848982.1|GD848982
EST:     TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAG                         GTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
genomic: TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGgtaactgttt ... cttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
EST: gi|21256821|gb|BQ453709.1|BQ453709
EST:     TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAG                         GTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
genomic: TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGgtaactgttt ... cttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGG
EST: gi|9203797|gb|BE330021.1|BE330021
EST:     TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAG                         GTTCTCATAATAAGAG
genomic: TGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGgtaactgttt ... cttcattcagGTTCTCATAATAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatcttatatcattagcttaaccaattttatctagctaatgtttcttcattcagGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGGAAAAACATGCAAGGACAGAGAATGTAACCTGTGTTGGTTTCAGTCAGAA
                                  agctaat  putative branch site (score: 3)
                                          tttcttcattc  CT-rich tract
                  ttaaccaattttat  TA-rich tract