1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttgcaaatatttgccattatttgtgtaggtaatgatgactttgaagttttaaatgtacacctctattattctaacgacttcttacttccggttttcgaagTCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCATTGTATTTATTCCTTACACCAAATATTGCAAGGTGCACGTTTGATTCTT
species | Glycine max |
transcript | GLYMA04G09070.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACTGAAGATCCTCTTTGACAATTTTCTGAACAATGCAGTTCAGCATTAAT TCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCAEST: gi|208227129|gb|GE022368.1|GE022368
genomic: ACTGAAGATCCTCTTTGACAATTTTCTGAACAATGCAGTTCAGCATTAATgtatgctaaa ... gttttcgaagTCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCA
EST: CCTCTTTGACAATTTTCTGAACAATGCAGTTCAGCATTAAT TCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCAEST: gi|20811697|gb|BQ296175.1|BQ296175
genomic: CCTCTTTGACAATTTTCTGAACAATGCAGTTCAGCATTAATgtatgctaaa ... gttttcgaagTCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCA
EST: TTCTGAACAATGCAGTTCAGCATTAAT TCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCA
genomic: TTCTGAACAATGCAGTTCAGCATTAATgtatgctaaa ... gttttcgaagTCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCA
gttttaaatgtacacctctattattctaacgacttcttacttccggttttcgaagTCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCATTGTATTTATTCCTTACACCAAATATTGCAAGGTGCACGTTTGATTCTT
ttttc CT-rich tract
tattattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaaatatttgccattatttgtgtaggtaatgatgactttgaagttttaaatgtacacctctattattctaacgacttcttacttccggttttcgaagTCTACATGATGGGGTTCTCCTGGTCAGTCGTTCTACATGACTGGATGCTCATTGTATTTATTCCTTACACCAAATATTGCAAGGTGCACGTTTGATTCTT
- - - - - -tgccatt
- - - - - - - - - - - gtgtagg
- - - - - - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgtac