1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttggccattacaatttacagcagcaacaattttatttcctactgtcccaagaatatcaccaattgaatttctttattggaatgttgtactatggttgcagGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAG
species | Glycine max |
transcript | GLYMA04G07460.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAG GGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCNNNNGGGGAGTTGEST: gi|193489351|gb|FK455354.1|FK455354
genomic: TTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAGgttggtttgc ... atggttgcagGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTG
EST: TTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAG GGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTGEST: gi|193412553|gb|FK377784.1|FK377784
genomic: TTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAGgttggtttgc ... atggttgcagGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTG
EST: TTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAG GGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTG
genomic: TTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAGgttggtttgc ... atggttgcagGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTG
cccaagaatatcaccaattgaatttctttattggaatgttgtactatggttgcagGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAG
aattgaatttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggccattacaatttacagcagcaacaattttatttcctactgtcccaagaatatcaccaattgaatttctttattggaatgttgtactatggttgcagGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAG
- ggccatt
- - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - - - - - tgtccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatgt