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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgttttcctggcatcataatatttgctttttataagttatattactgtatcttattttatttgtatctttcttaattcttatcatgaattttttcattggagatttttaatgccattttagttctctgtcattgtgttctcgataatgttagcagcatgattatttgaaaacctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATATCGAGCCCGACGATATAGCCGAAGTAGGAGCCCGGTTCGCAGTCGTTCC

Basic information

species Glycine max
transcript GLYMA04G07300.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732854|gb|BM527286.1|BM527286
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|192310390|gb|FK002270.1|FK002270
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|208189174|gb|GD983620.1|GD983620
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|9203730|gb|BE329954.1|BE329954
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|14206242|gb|BG839920.1|BG839920
EST:     CCCCTAGGCGTTTCAGGAGCCCACCKKCCACGTGGAAGAKCTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTMCACGCAGTCCACGATA
genomic: CCCCTAGGCGTTTCAGGAGCCCACC-ACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|208325379|gb|GE124087.1|GE124087
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|9203549|gb|BE329773.1|BE329773
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|20815080|gb|BQ299558.1|BQ299558
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|254314809|gb|GR829802.1|GR829802
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|20815090|gb|BQ299568.1|BQ299568
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|192310391|gb|FK002271.1|FK002271
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|22927307|gb|BU544446.1|BU544446
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGANCTCCCCCANN                         NTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|18734340|gb|BM528125.1|BM528125
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcattgtgttctcgataatgttagcagcatgattatttgaaaacctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATATCGAGCCCGACGATATAGCCGAAGTAGGAGCCCGGTTCGCAGTCGTTCC
                             atgattatttgaaaa  TA-rich tract