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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaattgaaattatgtagatataataatgttgtctcctgattgcgaaacattctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG

Basic information

species Glycine max
transcript GLYMA03G42360.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: AT3G14350.3 (Arabidopsis thaliana), 3'ss of exon 15
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaattgaaat-tatgtagatataataatgttgtctcctgattgcgaaacattctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
         |  ||||    |   | | | ||| | ||  | |  || | |    ||  ||  |||| | |  ||| ||   | |     ||  ||||||        | ||| ||||| ||||| ||||||| || || || |||||  |||||||||||||||| || || || |||||||| ||||  |||||||||||||| ||  | ||||||
--------gtacttttacaatccatat-ccctcgccttcctaaaaaa-acttaagagtgatgcaaatgtgttcaga-attgaagtaagtcctggtgattgttg-----tgtgtgacagCACAAGGTCAAGATCGGAACAATCATTGGTAAGATGGGCAACACCTCAGCTTCACGACATTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGG

upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: AT1G53730.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaat-tgaaattatgtagatataataatgttgtctcctgattgcgaaacattctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
         |    | | || || ||    ||       ||||   || |  |  |||||| ||    | | |  || | | ||         ||| ||   |     | || | |||| ||||| ||||||||||||||||  ||||||||||||| ||||| ||||| || || |||||||| || || |||||||||||||| ||  | ||||||
--------gtaaactctattatgatccaaactagg---cttgatgtatgtagttgagaaatgtgtttctgtttgaatcttacaa---------ctggttataa-----tttg-agcagCACAAGGTCAAGATCTGAGCAGTCACTGGTTCGATGGGCGACACCACAACTTCACGACATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGG

upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: AT1G53730.2 (Arabidopsis thaliana), 3'ss of exon 14
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaat-tgaaattatgtagatataataatgttgtctcctgattgcgaaacattctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
         |    | | || || ||    ||       ||||   || |  |  |||||| ||    | | |  || | | ||         ||| ||   |     | || | |||| ||||| ||||||||||||||||  ||||||||||||| ||||| ||||| || || |||||||| || || |||||||||||||| ||  | |||   
--------gtaaactctattatgatccaaactagg---cttgatgtatgtagttgagaaatgtgtttctgtttgaatcttacaa---------ctggttataa-----tttg-agCAGCACAAGGTCAAGATCTGAGCAGTCACTGGTTCGATGGGCGACACCACAACTTCACGACATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAA---

upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv09s0002g00150.t01 (Vitis vinifera), 3'ss of exon 14
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaattgaaattatgtagatataataatgttgtctcctgattgcga----aacattctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
|| ||  |||| ||    |  | | |   ||  | | ||        | || || ||| |     |        |||  ||  | |  |   || | |   |    |||||| | | ||||||| ||| | ||||||||||| ||||||||||||||||| || ||||| || ||||| || |||||  ||||||||||||||||||| ||| | ||||||
gtaaa--aatg-ttgcactactagcca--tccaatgattccattaccttttttgaagagaaaaggacctgaatcataccattttctacttagctaactattatgttaacattttctgacagCTCCAGGTCCAGATCTGAGCAATCTTTGGTTCGATGGGCTACTCCTCAGCTTCATGACATCGATGCTCTGGCTAAAATGGTTGATCCGGCACTCAAAGGG

upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: PP1S64_28V6.2 (Physcomitrella patens), 3'ss of exon 15
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaattgaaattatgtagatataataatgttgtctcctgattgcgaaacattctgta-acagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
             |  |  |    | |   || |    |||   |   | | |||     |  |   |||  ||  ||||  ||||  |  |||| |   ||| | ||       ||||||||| |||||||| |||||     |||| |||||||||||||| ||||| ||||||||||||||| | || | |||||| ||||| ||  |  | || 
-----------catcctcgtaaaatataacctgatcactttttccggcactttgctt---tctatcctat-cagtcataagtatgtcctaacctggt---gaacccttggacccgcagCTCAAGACCAAGATCCGAGCAAAACCTGGTGCGATGGGCAACACCACAACTGCATGATATTGATGCACTCGCAAGAATGGTGGATCCAGCGTTAGAGGGT

upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ34030 (Selaginella moellendorffii), 3'ss of exon 4
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaattgaaattatgtagatataataatgttgtctcctgattgcgaaaca----ttctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
                                                             | |  ||   ||| | | |   |  | | | |   | || ||| |    |||| |  ||| |||||  |  | || ||||||||  ||||  ||||||| |||||||||||||| |||||||||||  || |||||||||| || |||||  ||||||| 
------------------------------------------------------------gtaaggtttcctagttttcaaggttatatgttccattagctaaagaggtgttctatt-cagTTCAAGAGCGCGCTCGGAGCAGTCGCTGGTGAGATGGGCCACACCTCAACTCCACGATATTGATGCGCTGTCTAAAATGGTGGACCCTGCGTTGAAAGGC

upper sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ37538 (Selaginella moellendorffii), 3'ss of exon 13
gtgaattaatggttttttttttggtctgctctcacgtttttgagcaatattctgcagaaattgaaattatgtagatataataatgttgtctcctgattgcgaaaca----ttctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
                                                             | |  ||   ||| | | |   |  | | | |   | || ||| |    |||| |  ||| |||||  || | || ||||||||  ||||  ||||||| |||||||||||||| |||||||||||  || |||||||||| || |||||  ||||||| 
------------------------------------------------------------gtaaggtttcctagttttcaaggttatatgttccattagctaaagaggtgttctatt-cagTTCAAGAGCACGCTCGGAGCAGTCGCTGGTGAGATGGGCCACACCTCAACTCCACGATATTGATGCGCTGTCTAAAATGGTGGACCCTGCGTTGAAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattatgtagatataataatgttgtctcctgattgcgaaacattctgtaacagCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGG
                            tcctgat  putative branch site (score: 3)
     tatgtagatataataa  TA-rich tract